Index

B

biosample() (in module pulsarpy_to_encodedcc.backport_from_encode_portal.backport)

biosample_term_name() (in module pulsarpy_to_encodedcc.backport_from_encode_portal.backport)

C

check_if_biosample_has_exp_on_portal() (pulsarpy_to_encodedcc.dcc_submit.Submit method)

crispr_modification() (in module pulsarpy_to_encodedcc.backport_from_encode_portal.backport)

D

document() (in module pulsarpy_to_encodedcc.backport_from_encode_portal.backport)

donor() (in module pulsarpy_to_encodedcc.backport_from_encode_portal.backport)

E

error_logger (in module pulsarpy_to_encodedcc) ERROR_LOGGER_NAME (in module pulsarpy_to_encodedcc)

ExpMissingReplicates extend_arrays (pulsarpy_to_encodedcc.dcc_submit.Submit attribute)

F

FASTQ_FOLDER (in module pulsarpy_to_encodedcc)

G

get_barcode_details_for_ssc() (pulsarpy_to_encodedcc.dcc_submit.Submit method) get_biosample_term_name_and_type() (pulsarpy_to_encodedcc.dcc_submit.Submit method) get_chipseq_controlled_by() (pulsarpy_to_encodedcc.dcc_submit.Submit method)

get_exp_core_payload_props() (pulsarpy_to_encodedcc.dcc_submit.Submit method) get_gel_lane_with_biosample() (pulsarpy_to_encodedcc.dcc_submit.Submit method) get_vendor_id_from_encodeportal() (pulsarpy_to_encodedcc.dcc_submit.Submit method)

I

IpLaneException

M

MissingSequencingResult

MissingTargetUpstream

N

NoFastqFile

P

patch() (pulsarpy_to_encodedcc.dcc_submit.Submit method) post() (pulsarpy_to_encodedcc.dcc_submit.Submit method) post_bulk_atacseq_exp() (pulsarpy_to_encodedcc.dcc_submit.Submit method) post_chipseq_control_experiments() (pulsarpy_to_encodedcc.dcc_submit.Submit method) post_chipseq_ctl_exp() (pulsarpy_to_encodedcc.dcc_submit.Submit method) post_chipseq_exp() (pulsarpy_to_encodedcc.dcc_submit.Submit method) post_experimental_reps() (pulsarpy_to_encodedcc.dcc_submit.Submit method) post_fastq_file() (pulsarpy_to_encodedcc.dcc_submit.Submit method)

post_ip_biosample_characterization() (pulsarpy_to_encodedcc.dcc_submit.Submit method) post_library() (pulsarpy_to_encodedcc.dcc_submit.Submit method) post_library_through_fastq() (pulsarpy_to_encodedcc.dcc_submit.Submit method) post_replicate() (pulsarpy_to_encodedcc.dcc_submit.Submit method) post_sres() (pulsarpy_to_encodedcc.dcc_submit.Submit method) post_vendor() (pulsarpy_to_encodedcc.dcc_submit.Submit method) pulsarpy_to_encodedcc (module) pulsarpy_to_encodedcc.backport_from_encode_portal.backport (module) pulsarpy_to_encodedcc.dcc_submit (module)

S

sanitize_prop_val() (pulsarpy_to_encodedcc.dcc_submit.Submit method)

set_name() (in module pulsarpy_to_encodedcc.backport_from_encode_portal.backport) Submit (class in pulsarpy_to_encodedcc.dcc_submit)

T

target() (in module pulsarpy_to_encodedcc.backport_from_encode_portal.backport)

treatment() (in module pulsarpy_to_encodedcc.backport_from_encode_portal.backport) treatment_term_name() (in module pulsarpy_to_encodedcc.backport_from_encode_portal.backport)

U

UpstreamNotSet

V

vendor() (in module pulsarpy_to_encodedcc.backport_from_encode_portal.backport)